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Publications of iGRAD-Plant Fellows (IRTG 1525 & 2466)


Germann A, Nakielski A, Dietsch M, Petzel T, Moser D, Triesch S, Westhoff P, Axmann I (2023) A systematic overexpression approach reveals native targets to increase squalene production in Synechocystis sp. PCC 6803 , Frontiers in Plant Science, https://www.frontiersin.org/articles/10.3389/fpls.2023.1024981    

Segura Broncano, L., Pukacz, K.R., Reichel-Deland, V., Schlüter, U., Triesch, S., Weber, A.P.M. (2023) Photorespiration is the solution, not the problem.  J Plant Physiol.  Mar;282:153928. doi: https://doi.org/10.1016/j.jplph.2023.153928 

Mai, H., Baby, D., & Bauer, P. (2023) Black sheep, dark horses and colorful dogs: A review on the current state of the Gene Ontology with respect to iron homeostasis in Arabidopsis thaliana. https://doi.org/10.31219/osf.io/my2uj

Cui, M., Gupta, S. K., & Bauer, P. (2023, March 23). Review: Role of the plant-specific calcium-binding C2-DOMAIN ABSCISIC ACID-RELATED (CAR) protein family in environmental signaling. Preprint, https://doi.org/10.31219/osf.io/ve7ua  

Triesch, T., Denton, A.K., Buchmann, J.P., Reichel-Deland, V., Ferreira Martins Guerreiro, R.N., Schlüter, U., Stich, B., Weber, A.P.M. (2023) Transposable elements contribute to the establishment of the glycine shuttle in Brassicaceae species, Preprint bioRxiv doi: https://doi.org/10.1101/2022.12.06.519256

Heucken N, Tang K, Hüsemann L, Heßler N, Müntjes K, Feldbrügge M, Göhre V, Zurbriggen MD (2023) Engineering and implementation of synthetic molecular tools in the basidiomycete fungus Ustilago maydis, Journal of Fungi. 2023; 9(4):480. https://doi.org/10.3390/jof9040480

Behar H, Mottiar Y, Chandrasekhar R, Grappadelli AC, Pauly M, Samuels AL, Mansfield SD, Brumer H. Populus endo-glucanase 16 localizes to the cell walls of developing tissues. Plant Direct. 2023 Jan 30;7(2):e482. doi: 10.1002/pld3.482

Cosenza F, Shrestha A, Van Inghelandt D, Casale FA, Wu, PY, Weisweiler M, Li J, Wespel F, Stich B (2023) Genetic mapping reveals new loci and alleles for flowering time and plant height using the double round-robin population of barley, Preprint, published January 13, 2023  doi: https://doi.org/10.1101/2023.01.12.523733


Trofimov K, Gratz, R, Ivanov, R, Stahl Y, Bauer P and Brumbarova, T (2022) FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT) accumulates in homo- and heterodimeric complexes in dynamic and inducible nuclear condensates associated with speckle components, Preprint, published Dec 20, 2022: doi: https://doi.org/10.1101/2022.12.20.520918

Shrestha A, Cosenza F, van Inghelandt D, Wu PY, Li J, Casale FA, Weisweiler M, Stich B. The double round-robin population unravels the genetic architecture of grain size in barley. J Exp Bot. 2022 Sep 12:erac369. doi: 10.1093/jxb/erac369. Epub ahead of print.

Costigliolo Rojas C, Bianchimano L, Oh J, Romero Montepaone S, Tarkowská D, Minguet EG, Schön J, García Hourquet M, Flugel T, Blázquez MA, Choi G, Strnad M, Mora-García S, Alabadi D, Zurbriggen MD, Casal JJ. Organ-specific COP1 control of BES1 stability adjusts plant growth patterns under shade or warmth. Dev Cell. 2022 Aug 22;57(16):2009-2025.e6. doi: 10.1016/j.devcel.2022.07.003

Lichtblau DM, Schwarz B, Baby D, Endres C, Sieberg C and Bauer P (2022) The Iron Deficiency-Regulated Small Protein Effector FEP3/IRON MAN1 Modulates Interaction of BRUTUS-LIKE1 With bHLH Subgroup IVc and POPEYE Transcription Factors. Front. Plant Sci.13:930049. doi: 10.3389/fpls.2022.930049

Kuzay S, Lin H, Li C, Chen S, Woods DP, Zhang J, Lan T, von Korff M, Dubcovsky J. WAPO-A1 is the causal gene of the 7AL QTL for spikelet number per spike in wheat. PLoS Genet. 2022 Jan 13;18(1):e1009747. doi: 10.1371/journal.pgen.1009747


Kirschner GK, Rosignoli S, Guo L, Vardanega I, Imani J, Altmüller J, Milner SG, Balzano R, Nagel KA, Pflugfelder D, Forestan C, Bovina R, Koller R, Stöcker TG, Mascher M, Simmonds J, Uauy C, Schoof H, Tuberosa R, Salvi S, Hochholdinger F. ENHANCED GRAVITROPISM 2 encodes a STERILE ALPHA MOTIF-containing protein that controls root growth angle in barley and wheat. Proc Natl Acad Sci U S A. 2021 Aug 31;118(35):e2101526118. doi: 10.1073/pnas.2101526118

Kwon S, Rupp O, Brachmann A, Blum CF, Kraege A, Goesmann A, Feldbrügge M (2021) mRNA Inventory of Extracellular Vesicles from Ustilago maydis. J Fungi (Basel) 14;7(7):562. doi: 10.3390/jof7070562.

Balparda M, Elsässer M, Badia MB, Giese J, Bovdilova A, Hüdig M, Reinmuth L, Eirich J, Schwarzländer M, Finkemeier I, Schallenberg-Rüdinger M, Maurino VG. Acetylation of conserved lysines fine-tunes mitochondrial malate dehydrogenase activity in land plants. Plant J. 2021 Oct 28. doi: 10.1111/tpj.15556.  Epub ahead of print.

Saadat NP, Nies T, van Aalst M, Hank B, Demirtas B, Ebenhöh O and Matuszyńska A (2021) Computational Analysis of Alternative Photosynthetic Electron Flows Linked With Oxidative Stress Front. Plant Sci Oct 22 doi.org/10.3389/fpls.2021.750580

Dourado H, Mori M, Hwa T, Lercher MJ (2021) On the optimality of the enzyme–substrate relationship in bacteria. PLoS Biol 19(10): e3001416. doi.org/10.1371/journal.pbio.3001416

Schlegel J, Denay G, Gustavo Pinto K, Stahl Y, Schmid J, Blümke P, Simon R (2021) Control of Arabidopsis shoot stem cell homeostasis by two antagonistic CLE peptide signalling pathways eLife 10:e70934. doi: 10.7554/eLife.70934 Online ahead of print.

Kuhnert F, Weber APM (2021) Isolation of Plant Mitochondria Using Affinity Purification Methods Mol Biol. 2022;2363:25-37. doi: 10.1007/978-1-0716-1653-6_3

Schneider N, Chatelle CV, Ochoa-Fernandez R, Zurbriggen MD, Weber W (2021) Green Light-Controlled Gene Switch for Mammalian and Plant Cells. Methods Mol Biol. 2021;2312:89-107. doi: 10.1007/978-1-0716-1441-9_6

Braguy J, Samodelov SL, Andres J, Ochoa-Fernandez R, Al-Babili S, Zurbriggen MD (2021) A Protoplast-Based Bioassay to Quantify Strigolactone Activity in Arabidopsis Using StrigoQuant. Methods Mol Biol 2309:201-218. doi: 10.1007/978-1-0716-1429-7_16

Kuhnert F, Schlüter U, Linka N, Eisenhut M (2021) Transport Proteins Enabling Plant Photorespiratory Metabolism. Plants (Basel) 10(5). doi: 10.3390/plants10050880

Lin MY, Schlüter U, Stich B, Weber APM (2021) Cis-regulatory divergence underpins the evolution of C3-C4 intermediate photosynthesis in Moricandia bioRxiv 2021.05.10.443365; doi: 10.1101/2021.05.10.443365 

Roell MS, Schada von Borzykowski L, Westhoff P, Plett A, Paczia N, Claus P, Schlueter U, Erb TJ,  Weber APM (2021) A synthetic C4 shuttle via the β-hydroxyaspartate cycle in C3 plants PNAS 118 (21) e2022307118; DOI: 10.1073/pnas.2022307118

Kanwar P, Baby D and Bauer P (2021) Interconnection of iron and osmotic stress signaling in plants ‐ Is FIT a regulatory hub to cross‐connect abscisic acid responses? Plant Biology online March 2021 doi:10.1111/plb.13261

Lin MYKoppers N, Denton A, Schlüter U, Weber APM (2021) Whole genome sequencing and assembly data of Moricandia moricandioides and M. arvensis,Data in Brief (in pressdoi.org/10.1016/j.dib.2021.106922

Zhong J, van Esse GW, Bi X, Lan T, Walla A, Sang Q, Franzen R, and von Korff M (2020) INTERMEDIUM-M encodes an HvAP2L-H5 ortholog and is required for inflorescence indeterminacy and spikelet determinacy in barley, PNAS 118 (8) e2011779118 doi 10.1073/pnas.2011779118

Yokochi Y, Yoshida K, Hahn F, Miyagi A, Wakabayashi K, Kawai-Yamada M, Weber APM, and Hisabori T (2021) Redox regulation of NADP-malate dehydrogenase is vital for land plants under fluctuating light environment. PNAS118 (6) e2016903118 doi.org/10.1073/pnas.2016903118

Plücker LBösch K, Geißl L, Hoffmann P, Göhre V (2021) Genetic Manipulation of the Brassicaceae Smut Fungus Thecaphora thlaspeos.J Fungi 7(1):38  doi:10.3390/jof7010038


Kwon S, Tisserant C, Tulinski M, Weiberg A, Feldbrügge M (2020) Inside-out: from endosomes to extracellular vesicles in fungal RNA transport, Fungal Biol. Rev.,34 (2020) 89-99. doi.org/10.1016/j.fbr.2020.01.001.

Saadat NP, Nies T, Rousset Y, Ebenhöh O (2020) Thermodynamic Limits and Optimality of Microbial Growth. Entropy (Basel) 22(3):277. doi: 10.3390/e22030277

Behle A, Saake P, Germann AT, Dienst D, Axmann IM (2020) Comparative dose-response analysis of inducible promoters in cyanobacteria. ACS Synth. Biol. doi:10.1021/acssynbio.9b00505

Gupta SDLevey M, Schulze S, Karki S, Emmerling, Streubel M, Gowik G, Quick WP, Westhoff P (2020) The C4 Ppc promoters of many C4 grass species share a common regulatory mechanism for gene expression in the mesophyll cell. Plant J101(1):204-216  doi:10.1111/tpj.14532

de Vries S, Stukenbrock EH, Rose LE  (2020) Rapid evolution in plant-microbe interactions - an evolutionary genomics perspective. New Phytol 226(5):1256-1262  doi:10.1111/nph.16458

Hu X, Dourado H, Schubert P and Lercher MJ (2020) The protein translation machinery is expressed for maximal efficiency in Escherichia coliNat Commun11, 5260 https://doi.org/10.1038/s41467-020-18948-x

Plett A, Charton L, Linka N (2020) Peroxisomal Cofactor Transport. Biomolecules10(8):E1174  doi: 10.3390/biom10081174

Baune MC, Lansing H, Fischer K, Meyer T, Charton L, Linka N, von Schaewen A (2020) The Arabidopsis Plastidial Glucose-6-phosphate Transporter GPT1 is Dually Targeted to Peroxisomes via the Endoplasmic Reticulum. Plant Cell. pii: tpc.00959.2019. doi: 10.1105/tpc.19.00959.

Schnake A, Hartmann M, Schreiber S, Malik J, Brahmann L, Yildiz I,  von Dahlen  J, Rose LE, Schaffrath U, Zeier J (2020) Inducible biosynthesis and immune function of the systemic acquired resistance inducer N-hydroxypipecolic acid in monocotyledonous and dicotyledonous plants. J Exp Boteraa317  doi: 10.1093/jxb/eraa317

Ochoa-Fernandez R, Abel NB, Wieland F, Schlegel J, Koch LA, Miller B, Engesser R, Giuriani G, Brandl SM, Timmer J, Weber W, Ott T, Simon R, Zurbriggen MD (2020) Optogenetic control of gene expression in plants in the presence of ambient white light. Nat Methods doi.org/10.1038/s41592-020-0868-y

Brito DS, Agrimi G, Charton L, Brilhaus D, Bitetto MG, Lana-Costa J, Messina E, Nascimento CP, Feitosa-Araujo E, Pires MV, Perez-Diaz JL, Obata T, Porcelli V, Palmieri L, Araujo WL, Weber APM, Linka N, Fernie AR, Palmieri F, Nunes-Nesi A (2020) Biochemical and functional characterization of a mitochondrial citrate carrier in Arabidopsis thaliana. Biochem J 477(9):1759-1777. doi: 10.1042/BCJ20190785

Dourado H & Lercher  MJ (2020) An analytical theory of balanced cellular growth Nat Commun 11, 1226 DOI: https://doi.org/10.1038/s41467-020-14751-w

Roell MS and Zurbriggen MD (2020) The impact of synthetic biology for future agriculture and nutrition Curr Opin Biotechnol 61:102–109. doi: 10.1016/j.copbio.2019.10.004 [Epub ahead of print]

Schwarz B, Bauer P (2020) FIT, a regulatory hub for iron deficiency and stress signaling in roots, and FIT-dependent and -independent gene signatures. J Exp Bot. doi: 10.1093/jxb/eraa012

Schwarz B, Azodi CB, Shiu SH, Bauer P (2020) Putative cis-regulatory elements predict iron deficiency responses in Arabidopsis roots, Plant Physiol., January 2020 DOI: 10.1104/pp.19.00760


Kuhnert F, Stefanski A, Overbeck N, Drews L, Reichert AS, Stühler K, Weber APM (2019) Rapid single-step affinity purification of HA-tagged plant mitochondria Plant Physiol DOI: https://doi.org/10.1104/pp.19.00732

Bovdilova A, Alexandre BM, Hoppner A, Matias Luis I, Alvarez CE, Bickel D, Gohlke H, Decker C, Nagel-Steger L, Alseekh S, Fernie AR, Drincovich MF, Abreu IA, Maurino VG (2019) Posttranslational modification of the NADP-malic enzyme involved in C4 photosynthesis fine-tunes the enzymatic activity during the day. Plant Cell. DOI: 10.1105/tpc.19.00406

Gratz R, Brumbarova T, Ivanov R, Trofimov K, Tünnermann L, Ochoa-Fernandez R, Blomeier T, Meiser J, Weidtkamp-Peters S, Zurbriggen M, Bauer P (2019) Phospho-mutant activity assays provide evidence for alternative phospho-regulation pathways of the transcription factor FIT New Phytol. doi: 10.1111/nph.16168 [Epub ahead of print]

Trofimov K, Ivanov R, Eutebach M, Acaroglu B, Mohr I, Bauer P, Brumbarova T (2019) Mobility and localization of the iron deficiency-induced transcription factor bHLH039 change in the presence of FIT. Plant Direct. doi: 10.1002/pld3.190

Alvarez CE, Bovdilova A, Höppner A, Wolff CC, Saigo M, Trajtenberg F, Zhang T, Buschiazzo A, Nagel-Steger L, Drincovich MF, Lercher MJ, Maurino VG (2019) Molecular adaptations of NADP-malic enzyme for its function in C4 photosynthesis in grasses Nat Plants. 5(7):755-765 doi: 10.1038/s41477-019-0451-7

de Souza Chaves I, Feitosa-Araújo E, Florian A, Medeiros DB, da Fonseca-Pereira P, Charton L, Heyneke E, Apfata JAC, Pires MV, Mettler-Altmann T, Araújo WL, Neuhaus HE, Palmieri F, Obata T, Weber APM, Linka N, Fernie AR, Nunes-Nesi A (2019) The mitochondrial NAD+ transporter (NDT1) plays important roles in cellular NAD+ homeostasis in Arabidopsis thaliana Plant J. doi: 10.1111/tpj.14452 [Epub ahead of print]

Klein S, Fiebig A, Neuwald D, Dluhosch D, Müller L, Groth G, Noga G, Hunsche M (2019) Influence of the ethylene-related signal-inhibiting octapeptide NOP-1 on postharvest ripening and quality of 'Golden Delicious' apples J Sci Food Agric. 99(8):3903-3909 doi: 10.1002/jsfa.9613

Kim YI, Nam IK, Lee DK, Bhandari S, Charton L, Kwak S, Lim JY, Hong K, Kim SJ, Lee JN, Kwon SW, So HS, Linka N, Park R, Choe SK (2019) Slc25a17 acts as a peroxisomal coenzyme A transporter and regulates multiorgan development in zebrafish. J Cell Physiol. doi: 10.1002/jcp.28954 [Epub ahead of print]

Khan I, Gratz R, Denezhkin P, Schott-Verdugo SN, Angrand K, Genders L, Basgaran RM, Fink-Straube C, Brumbarova T, Gohlke H, Bauer P, Ivanov R (2019) Calcium-Promoted Interaction between the C2-Domain Protein EHB1 and Metal Transporter IRT1 Inhibits Arabidopsis Iron Acquisition Plant Physiol. 180(3):1564-1581 doi: 10.1104/pp.19.00163

Schneider T, Bolger A, Zeier J, Preiskowski S, Benes V, Trenkamp S, Usadel B, Farré EM, Matsubara S (2019) Fluctuating Light Interacts with Time of Day and Leaf Development Stage to Reprogram Gene Expression Plant Physiol. 179(4):1632-1657 doi: 10.1104/pp.18.01443 

Maleckova E, Brilhaus D, Wrobel TJ, Weber APM (2019) Transcript and Metabolite Changes during the Early Phase of ABA-mediated Induction of CAM in Talinum triangulare. J Exp Bot. doi: 10.1093/jxb/erz189

Eisenhut M, Roell MS, Weber APM (2019) Mechanistic understanding of photorespiration paves the way to a new green revolution. New Phytol. doi: 10.1111/nph.15872

de Vries S, de Vries J, Rose LE (2019) The Elaboration of miRNA Regulation and Gene Regulatory Networks in Plant-Microbe Interactions. Genes (Basel) 10(4) pii: E310. doi: 10.3390/genes10040310

Charton L, Plett A, Linka N (2019) Plant peroxisomal solute transporter proteins J Integr Plant Biol. doi: 10.1111/jipb.12790 

Gratz R, Manishankar P, Ivanov R, Köster P, Mohr I, Trofimov, K, Steinhorst L, Meiser J, Mai HJ, Drerup M, Arendt S, Holtkamp M, Karst U, Kudla J, Bauer P, Brumbarova, T (2019) CIPK11-Dependent Phosphorylation Modulates FIT Activity to Promote Arabidopsis Iron Acquisition in Response to Calcium Signaling Developmental Cell  doi.org/10.1016/j.devcel.2019.01.006

Courville KJFrantzeskakis LGul S, Haeger N, Kellner R, Heßler N, Day B, Usadel B, Gupta YK, van Esse HP, Brachmann A, Kemen E, Feldbrügge M, Göhre V (2019) Smut infection of perennial hosts: the genome and the transcriptome of the Brassicaceae smut fungus Thecaphora thlaspeos reveal functionally conserved and novel effectors. New Phytol. 2019 Jan 21. doi: 10.1111/nph.15692 [Epub ahead of print]


Samuilov S, Brilhaus D, Rademacher N, Flachbart S, Arab L, Alfarraj Saleh, Kuhnert F, Kopriva S, Weber APM, Mettler-Altmann T, Rennenberg H (2018) The Photorespiratory BOU Gene Mutation Alters Sulfur Assimilation and Its Crosstalk With Carbon and Nitrogen Metabolism in Arabidopsis thaliana. Frontiers in Plant Science DOI:10.3389/fpls.2018.01709 

Döring F, Billakurthi K, Gowik U, Sultmanis S, Khoshravesh R, Das Gupta S, Sage TL, Westhoff P. (2018) Reporter-based forward genetic screen to identify bundle sheath anatomy mutants in A. thaliana. Plant J. doi: 10.1111/tpj.14165.

Bahramisharif A, Rose LE. (2018) Planta. Efficacy of biological agents and compost on growth and resistance of tomatoes to late blight. Planta. doi: 10.1007/s00425-018-3035-2.

Levey M, Timm S, Mettler-Altmann T, Luca Borghi G, Koczor M, Arrivault S, Weber APM, Bauwe H, Gowik U, Westhoff P. (2018) Efficient 2-phosphoglycolate degradation is required to maintain carbon assimilation and allocation in the C4 plant Flaveria bidentis. J Exp Bot. doi: 10.1093/jxb/ery370

Aschenbroich J, Hussnaetter KP, Stoffels P, Langner T, Zander S, Sandrock B, Bölker M, Feldbrügge M, Schipper K (2018) The germinal Centre kinase Don3 is crucial for unconventional secretion of chitinase Cts1 in Ustilago maydis. Biochim Biophys Acta Proteins Proteom. pii: S1570-9639(18)30176-6. doi: 10.1016/j.bbapap.2018.10.007

Sundermann E, Lercher MJ, Heckmann D (2018) Modeling Cellular Resource Allocation Reveals Low Phenotypic Plasticity of C4 Plants and Infers Environments of C4 Photosynthesis Evolution bioRxiv preprint  doi: https://doi.org/10.1101/371096 

Hartleb D, Fritzemeier CJ, Lercher MJ (2018) Automated high-quality reconstruction of metabolic networks from high-throughput data bioRxiv preprint  doi: https://doi.org/10.1101/282251

Delporte M, Bernard G, Legrand G, Hielscher B, Lanoue A, Molinié R, Rambaud C, Mathiron D, Besseau S, Linka N, Hilbert JL, Gagneul D (2018) A BAHD neofunctionalization promotes tetrahydroxycinnamoyl spermine accumulation in pollen coat of the Asteraceae family. J Exp Bot. 2018 Aug 31. doi: 10.1093/jxb/ery320

de Vries S, de Vries J, von Dahlen JK, Gould SB, Archibald JM, Rose LE, Slamovits CH (2018) On plant defense signaling networks and early land plant evolution. Commun Integr Biol. 9;11(3):1-14. doi: 10.1080/19420889.2018.1486168

de Vries S, de Vries J, Teschke H, von Dahlen JK, Rose LE., Gould SB (2018) Jasmonic and salicylic acid response in the fern Azolla filiculoides and its cyanobiont. Plant Cell Environment. DOI: 10.1111/pce.13131

Frantzeskakis L, von Dahlen JK, Panstruga R, Rose LE (2018) Rapid evolution in the tug-of-war between microbes and plants. New Phytol. 2018 Jul;219(1):12-14. doi: 10.1111/nph.15220

Beddows I, Rose LE (2018) Factors determining hybridization rate in plants: A case study in Michigan. Perspectives in Plant Ecology, Evolution and Systematics Volume 34, Oct18, Pages 51-60, doi.org/10.1016/j.ppees.2018.07.003

Chatelle C, Ochoa-Fernandez R, Engesser R, Schneider N, Beyer HM, Jones AR, Timmer J, Zurbriggen MD, Weber W (2018) A Green-Light-Responsive System for the Control of Transgene Expression in Mammalian and Plant Cells.  ACS Synth Biol. 2018 May 18;7(5):1349-1358. doi: 10.1021/acssynbio.7b00450

Denton AK, Maß J, Külahoglu C, Lercher MJ, Bräutigam A, Weber APM (2018) Corrigendum: Freeze-quenched maize mesophyll and bundle sheath separation uncovers bias in previous tissue-specific RNA-Seq data. J Exp Bot. 2018 Jun 27;69(15):3789. doi: 10.1093/jxb/ery196

Hahn F, Eisenhut M, Mantegazza O, Weber APM (2018) Homology-Directed Repair of a Defective Glabrous Gene in Arabidopsis With Cas9-Based Gene Targeting. Front Plant Sci. 2018 Apr 5;9:424. doi: 10.3389/fpls.2018.00424

Hartmann M, Zeier T, Bernsdorff F, Reichel-Deland V, Kim D, Hohmann M, Scholten N, Schuck S, Bräutigam A, Hölzel T, Ganter C, Zeier J (2018) Flavin Monooxygenase-Generated N-Hydroxypipecolic Acid Is a Critical Element of Plant Systemic Immunity. Cell https://doi.org/10.1016/j.cell.2018.02.049

de Vries S, von Dahlen JK, Schnake A, Ginschel S, Schulz B, Rose LE (2018) Broad-spectrum inhibition of Phytophthora infestans by fungal endophytes. FEMS Microbiol Ecol. doi: 10.1093/femsec/fiy037

de Vries S, Kukuk A, von Dahlen JK, Schnake A, Kloesges T, Rose LE (2018) Expression profiling across wild and cultivated tomatoes supports the relevance of early miR482/2118 suppression for Phytophthora resistance. Proc Biol Sci 285(1873). DOI: 10.1098/rspb.2017.2560

Monné M, Daddabbo L, Gagneul D, Obata T, Hielscher B, Palmieri L, Miniero DV, Fernie AR, Weber APM, Palmieri F (2018) Uncoupling proteins 1 and 2 (UCP1 and UCP2) from Arabidopsis thaliana are mitochondrial transporters of aspartate, glutamate and dicarboxylates. J Biol Chem. pii: jbc.RA117.000771. doi: 10.1074/jbc.RA117.000771

Pribil M, Sandoval-Ibáñez O, Xu W, Sharma A, Labs M, Liu Q, Galgenmüller C, Schneider T, Wessels M, Matsubara S, Jansson S, Wanner G, Leister D. (2018) CURT1-mediated thylakoid plasticity is required for fine-tuning photosynthesis and plant fitness. Plant Physiol pii: pp.00863.2017. doi: 10.1104/pp.17.00863


Brandenburg, F., Schoffman, H., Keren, N. and Eisenhut, M. (2017). Determination of Mn Concentrations in Synechocystis sp. PCC 6803 Using ICP-MS. Bio-protocol 7(23): e2623. DOI: 10.21769/BioProtoc.2623.

Kleinmanns JA, Schatlowski N, Heckmann D and Schubert D (2017) BLISTER Regulates Polycomb-Target Genes, Represses Stress-Regulated Genes and Promotes Stress Responses in Arabidopsis thaliana Front Plant Sci.; 8:1530. doi:  10.3389/fpls.2017.01530

Dourado H, Maurino VG, Lercher MJ (2017) Enzymes And Substrates Are Balanced At Minimal Combined Mass Concentration In Vivo bioRxiv preprint  doi: https://doi.org/10.1101/128009

Hartings S, Paradies S, Karnuth B, Eisfeld S, Mehsing J, Wolff C, Levey T, Westhoff P, Meierhoff K (2017) The DnaJ-Like Zinc-Finger Protein HCF222 Is Required for Thylakoid Membrane Biogenesis in Plants. Plant Physiol 174(3):1807-1824. doi: 10.1104/pp.17.00401

Dijkhuizen LW, Brouwer P, Bolhuis H, Reichart GJ, Koppers N, Huettel B, Bolger AM, Li FW, Cheng S, Liu X, Wong GK, Pryer K, Weber A, Bräutigam A, Schluepmann H (2017) Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N2 but may denitrify. New Phytol. doi: 10.1111/nph.14843

Beddows I, Reddy A, Kloesges T, Rose LE (2017) Population genomics in wild tomatoes - the interplay of divergence and admixture. Genome Biol Evol. doi: 10.1093/gbe/evx224

Roell MS, Kuhnert F, Zamani-Nour S, Weber APM (2017) In Vitro Analysis of Metabolite Transport Proteins. Methods Mol Biol. 1653:83-96. doi: 10.1007/978-1-4939-7225-8_6

Hahn F, Eisenhut M, Mantegazza O and Weber AP (2017) Generation of Targeted Knockout Mutants in Arabidopsis thaliana Using CRISPR/Cas9. Bio-protocol 7(13): e2384. DOI: 10.21769/BioProtoc.2384

Hartmann M, Kim D, Bernsdorff F, Ajami-Rashidi Z, Scholten N, Schreiber S, Zeier T, Schuck S, Reichel-Deland V, Zeier J (2017) Biochemical Principles and Functional Aspects of Pipecolic Acid Biosynthesis in Plant Immunity. Plant Physiol. 174(1):124-153. doi: 10.1104/pp.17.00222

de Vries J, de Vries S, Slamovits C Rose LE, Archibald JM (2017) How Embryophytic is the Biosynthesis of Phenylpropanoids and their Derivatives in Streptophyte Algae? Plant Cell Physiol. 58(5):934-945. doi: 10.1093/pcp/pcx037

Rast-Somssich MI, Žádníková P, Schmid S, Kieffer M, Kepinski S, Simon R (2017) The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J Exp Bot erx131 doi: 10.1093/jxb/erx131

Heckmann D, Schlüter U, Weber APM (2017) Machine Learning Techniques for Predicting Crop Photosynthetic Capacity from Leaf Reflectance Spectra. Mol Plant. pii: S1674-2052(17)30130-2. doi: 10.1016/j.molp.2017.04.009

Fritzemeier CJ, Hartleb D, Szappanos B, Papp B, Lercher MJ (2017) Erroneous energy-generating cycles in published genome scale metabolic networks: Identification and removal. PLoS Comput Biol. 13(4):e1005494. doi: 10.1371/journal.pcbi.1005494. 

Hielscher BCharton L, Mettler-Altmann T, Linka N (2017) Analysis of Peroxisomal β-Oxidation During Storage Oil Mobilization in Arabidopsis thaliana Seedlings. Methods Mol Biol. 1595:291-304. doi: 10.1007/978-1-4939-6937-1_27

Denton AKMaß JKülahoglu C, Lercher MJ, Bräutigam A, Weber AP (2017) Freeze-quenched maize mesophyll and bundle sheath separation uncovers bias in previous tissue-specific RNA-Seq data. J Exp Bot. 68(2):147-160. doi: 10.1093/jxb/erw463.

Frantzeskakis FCourville KJPluecker L, Kellner R, Kruse J, Brachmann A, Feldbrügge M and Göhre V (2017) The plant-dependent life cycle of Thecaphora thlaspeos: a smut fungus adapted to Brassicacea. Mol Plant Microbe Interact. doi.org/10.1094/MPMI-08-16-0164-R

Brandenburg F, Schoffmann H, Kurz S, Kraemer U, Keren N, Weber APM, Eisenhut M (2017) The Synechocystis MANGANESE EXPORTER Mnx is essential for manganese homeostasis in cyanobacteria. Plant Physiology January 30, 2017 pp.01895.2016 DOI:10.1104/pp.16.01895

Hahn F, Mantegazza O, Greiner A, Hegemann P, Eisenhut M and Weber APM (2017) An Efficient Visual Screen for CRISPR/Cas9 Activity in Arabidopsis thaliana. Front. Plant Sci. 8:39. doi: 10.3389/fpls.2017.00039


Betti M, Bauwe H, Busch FA, Fernie AR, Keech O, Levey M, Ort DR, Parry MA, Sage R, Timm S, Walker B, Weber AP (2016) Manipulating photorespiration to increase plant productivity: recent advances and perspectives for crop improvement. J Exp Bot. 2016 May;67(10):2977-88. doi: 10.1093/jxb/erw076

Ochoa-Fernandez R, Samodelov SL, Brandl SM, Wehinger E, Müller K, Weber W, Zurbriggen MD (2016) Erratum to: Optogenetics in Plants: Red/Far-Red Light Control of Gene Expression. Methods Mol Biol. 2016;1408:E1. doi: 10.1007/978-1-4939-3512-3_28

Ochoa-Fernandez R, Samodelov SL, Brandl SM, Wehinger E, Müller K, Weber W, Zurbriggen MD (2016) Optogenetics in Plants: Red/Far-Red Light Control of Gene Expression. Methods Mol Biol. 2016;1408:125-39. doi: 10.1007/978-1-4939-3512-3_9

Matsubara S, Schneider T, Maurino VG (2016) Dissecting Long-Term Adjustments of Photoprotective and Photo-Oxidative Stress Acclimation Occurring in Dynamic Light Environments. Front Plant Sci 7:1690. eCollection 2016

Bösch K, Frantzeskakis L, Vraneš M, Kämper J, Schipper K, Göhre V (2016) Genetic Manipulation of the Plant Pathogen Ustilago maydis to Study Fungal Biology and Plant Microbe Interactions. J Vis Exp. Sep 30;(115). doi: 10.3791/54522

Li Y, Heckmann D, Lercher MJ, Maurino VG (2016) Combining genetic and evolutionary engineering to establish C4 metabolism in C3 plants. J Exp Bot. Sep 22. pii: erw333. DOI: 10.1093/jxb/erw333

Hartleb D, Jarre F, Lercher MJ (2016) Improved Metabolic Models for E. coli and Mycoplasma genitalium from GlobalFit, an Algorithm That Simultaneously Matches Growth and Non-Growth Data Sets. PLoS Comput Biol Aug 2;12(8)e1005036 doi: 10.1371/journal.pcbi.1005036. eCollection 2016.

Correa-Galvis V, Redekop P, Guan K, Griess A, Truong TB, Wakao S, Niyogi KK, Jahns P (2016) Photosystem II Subunit PsbS Is Involved in the Induction of LHCSR Protein-dependent Energy Dissipation in Chlamydomonas reinhardtii. J Biol Chem. Aug 12;291(33):17478-87. doi: 10.1074/jbc.M116.737312.

Bisson MM, Kessenbrock M, Müller L, Hofmann A, Schmitz F, Cristescu SM, Groth G (2016) Peptides interfering with protein-protein interactions in the ethylene signaling pathway delay tomato fruit ripening. Sci Rep Aug 1;6:30634. doi:1038/srep30634.

de Vries S, von Dahlen JK, Uhlmann C, Schnake A, Kloesges T, Rose LE (2016) Signatures of selection and host adapted gene expression of the Phytophthora infestans RNA-silencing suppressor PSR2. Mol Plant Pathol Aug 9 doi: 10.1111/mpp.12465. [Epub ahead of print] 

van Roermund CW, Schroers MG, Wiese J, Facchinelli F, Kurz S, Wilkinson S, Charton L, Wanders RJ, Waterham HR, Weber AP, Linka N (2016) The Peroxisomal NAD Carrier from Arabidopsis Imports NAD in Exchange with AMP. Plant Physiol. Jul;171(3):2127-39. doi: 10.1104/pp.16.00540.

Heckmann D (2016) C4 photosynthesis evolution: the conditional Mt. Fuji. Curr Opin Plant Biol. Jun;31:149-54. doi: 10.1016/j.pbi.2016.04.008.

Brilhaus D, Bräutigam A, Mettler-Altmann T, Winter K, Weber APM (2016) Reversible Burst of Transcriptional Changes during  Induction of Crassulacean Acid Metabolism in Talinum triangulare. Plant Physiol 170: 102–122, http://www.plantphysiol.org/content/170/1/102.full.pdf+html

Langner T, Göhre V (2016) Fungal chitinases: function, regulation, and potential roles in plant/pathogen interactions. Curr Genet. 62(2):243-54 doi: 10.1007/s00294-015-0530-x.

Schlüter U, Denton AK, Bräutigam A3 (2016) Understanding metabolite transport and metabolism in C4 plants through RNA-seq. Curr Opin Plant Biol 31:83-90. doi: 10.1016/j.pbi.2016.03.007

Bernsdorff F, Döhring AC, Gruner K, Schuck S, Bräutigam A, Zeier J (2016) Pipecolic Acid Orchestrates Plant Systemic Acquired Resistance and Defense Priming via Salicylic Acid-Dependent and -Independent Pathways. Plant Cell 28(1):102-29 doi: 10.1105/tpc.15.00496

Stahl E, Bellwon P, Huber S, Schlaeppi K, Bernsdorff F, Vallat-Michel A, Mauch F, Zeier J (2016) Regulatory and Functional Aspects of Indolic Metabolism in Plant Systemic Acquired Resistance. Mol Plant 9(5):662-81 doi: 10.1016/j.molp.2016.01.005.

Correa-Galvis V, Poschmann G, Melzer M, Stühler K, Jahns P (2016) PsbS interactions involved in the activation of energy dissipation in Arabidopsis. Nat Plants. Feb 1;2:15225. doi: 10.1038/nplants.2015.225.


de Vries S, Kloesges T, Rose LE (2015) Evolutionarily Dynamic, but Robust, Targeting of Resistance Genes by the miR482/2118 Gene Family in the Solanaceae , Genome Biol Evol 7 (12): 3307-3321. doi: 10.1093/gbe/evv225

Heckmann D (2015) Modelling metabolic evolution on phenotypic fitness landscapes: a case study on C4 photosynthesis. Biochem Soc Trans. Dec;43(6):1172-6. doi: 10.1042/BST20150148.

Boyer F, Simon R. (2015) Asymmetric cell divisions constructing Arabidopsis stem cell niches: the emerging role of protein phosphatases. Plant Biol (Stuttg). Sep;17(5):935-45. doi: 10.1111/plb.12352. 

Richards S, Wink RH, Simon R (2015) Mathematical modelling of WOX5-and CLE40-mediated columella stem cell homeostasis in Arabidopsis. J Exp Bot. Aug;66(17):5375-84. doi: 10.1093/jxb/erv257

Thorsten Langner, Merve Öztürk, Sarah Hartmann, Stefan Cord-Landwehr, Bruno Moerschbacher, Jonathan D. Walton, Vera Göhre (2015) "Chitinases are essential for cell separation in Ustilago maydis". Eukaryotic Cell 14(9):846-57 doi: 10.1093/gbe/evv225.

Rauch C, Vries Jd, Rommel S, Rose LE, Woehle C, Christa G, Laetz EM, Wägele H, Tielens AG, Nickelsen J, Schumann T, Jahns P, Gould SB. (2015) Why It Is Time to Look Beyond Algal Genes in Photosynthetic Slugs. Genome Biol Evol. Aug 29;7(9):2602-7. doi: 10.1093/gbe/evv173.

Göhre V (2015) Immune responses: Photosythetic defense Nature Plants 1:15079 ​doi:10.1038/nplants.2015.79, http://www.nature.com/articles/nplants201579

Wu G, Hufnagel DE, Denton AK, Shiu SH (2015) Retained duplicate genes in green alga Chlamydomonas reinhardtii tend to be stress responsive and experience frequent response gains. BMC Genomics. 16:149. doi: 10.1186/s12864-015-1335-5.


Paulus JK, Förster K, Groth G (2014) Direct and selective small-molecule inhibition of photosynthetic PEP carboxylase: New approach to combat C4 weeds in arable crops. FEBS Lett. 2014 5;588(12):2101-6. doi: 10.1016/j.febslet.2014.04.043

Schlieper D, Förster K, Paulus JK, Groth G (2014) Resolving the activation site of positive regulators in plant phosphoenolpyruvate carboxylase. Mol Plant. 2014 Feb;7(2):437-40. doi: 10.1093/mp/sst130

Armbruster U, Carrillo LR, Venema K, Pavlovic L, Schmidtmann E, Kornfeld A, Jahns P, Berry JA, Kramer DM, Jonikas MC (2014) Ion antiport accelerates photosynthetic acclimation in fluctuating light environments. Nat Commun. Nov 13;5:5439. doi: 10.1038/ncomms6439.

Kleinmanns JA, Schubert D (2014) Polycomb and Trithorax group protein-mediated control of stress responses in plants. Biol Chem. Nov 1;395(11):1291-300. doi: 10.1515/hsz-2014-0197.    

Pick TR, Weber APM (2014) Unknown components of the plastidial permeome. Front. Plant Sci. 4(410) doi: 10.3389/fpls.2014.00410.

Aldous SA, Weise SE, Sharkey TD, Waldera-Lupa DM, Stühler K, Malmann J, Groth G, Gowik U, Westhoff P, Arsova B (2014): Evolution of the phosphoenolpyruvate carboxylase protein kinase family in C3 and C4 Flaveria species. Plant Physiol DOI:10.1104/ pp.114.240283.

Bräutigam A, Schliesky S, Külahoglu C, Osborne C, Weber APM (2014) Towards an integrative model of C4 photosynthetic subtypes – insights from comparative transcriptome analysis of NAD-ME, NADP-ME, and PEP-CK C4 species. J Exp Bot, doi: 10.1093/jxb/eru100.

Brouwer P, Bräutigam A, Külahoglu C, Tazelaar A, Kurz S, Nierop K, van der Werf A, Weber APM, Schluepmann H (2014) Azolla domestication towards a biobased economy? Transcriptome database and methods for dissemination, cross fertilization, and storage of Azolla fllliculoides. New Phytol 202(3): 1069-1082.

Esser C, Kuhn A, Groth G, Lercher MJ, Maurino VG (2014) Plant and animal glycolate oxidases have a common eukaryotic ancestor and convergently duplicated to evolve long-chain 2-hydroxy acid oxidases. Mol Biol Evol 31(5):1089-101.

Külahoglu C and Bräutigam A (2014) Quantitative transcriptome analysis using RNA-seq. Methods Mol Biol. 1158:71-91. doi: 10.1007/978-1-4939-0700-7_5.

Külahoglu C, Denton AK, Sommer M, Maß J, Schliesky S, Wrobel TJ, Berckmans B, Gongora-Castillo E, Buell CR, Simon R, De Veylder L, Bräutigam A, Weber APM (2014) Comparative transcriptome atlases reveal altered gene expression modules between two Cleomaceae C3 and C4 plant species. Plant Cell, in press.

Levey T, Westhoff P, Meierhoff K (2014) Expression of a nuclear-encoded psbH gene complements the plastidic RNA processing defect in the PSII mutant hcf107 in Arabidopsis thaliana. Plant Journal doi: 10.1111/tpj.12632.

Mallmann J*, Heckmann D*, Bräutigam A, Lercher MJ, Weber APM, Westhoff P, Gowik U (2014) The role of photorespiration during the evolution of C4 photosynthesis in the genus Flaveria. eLife 10.7554/eLife.02478#sthash.CCB3QOPb.dpuf.


Bordych C, Eisenhut M, Pick TR, Külahoglu C, Weber APM (2013): Co-expression analysis as tool for the discovery of transport proteins in photorespiration. Plant Biol 15 (4): 686-93.

Cheng S, van den Bergh E, Zeng P, Zhong X, Xu J, Liu X, Hofberger J, de Bruijn S, Bhide AS, Külahoglu C, Bian C, Chen J, Fan G, Kaufmann K, Hall JC, Becker A, Bräutigam A, Weber APM, Shi C, Zheng Z, Li W, Lv M, Wang J, Zou H, Quan Z, Hibberd JM, Zhang G, Zhu XG, Xu X, Schranz E (2013) The genome of Tarenaya hassleriana provides insights into reproductive trait and genome evolution of crucifers. Plant Cell (8): 2813-30.

Denton AK, Simon R, Weber APM (2013) C4 photosynthesis: from evolutionary analyses to strategies for synthetic reconstruction of the trait. Curr Opin Plant Biol 16 (3): 315-21.

Heckmann D, Schulze S, Denton A, Gowick U, Westhoff P, Weber APM, Lercher M (2013) Predicting C4 photosynthesis evolution: modular, individually adaptive steps on a Mount Fuji fitness landscape. Cell 153, 1579-1588.

Kessel-Vigelius SK, Wiese J, Schroers MG, Wrobel TJ, Hahn F, Linka N (2013) An engineered plant peroxisome and its application in biotechnology. Plant Sci 210:232-40.

Návarová H, Bernsdorff F, Döring A-C, Zeier J (2013) Pipecolic acid, an endogenous mediator of defense amplification and priming, is a critical regulator of inducible plant immunity. Plant Cell 24: 5123-41.

Paulus JK, Niehus C, Groth G (2013) Evolution of C4 Phosphoenolpyruvate Carboxylase - enhanced feedback inhibitor tolerance is determined by a single residue. Mol Plant 6 (6): 1996 -9.

Paulus JK, Schlieper D, Groth G (2013) Greater efficiency of photosynthetic carbon fixation due to single amino-acid substitution. Nature Commun 4:1518.

Pick TR, Bräutigam A, Schulz MA, Obata T, Fernie AR, and Weber APM (2013): Mesophyll envelope protein 1, the photorespiratory glycolate glycerate transporter, defines a new class of metabolite transporters. Proc Natl Acad Sci USA 110 (8): 3185-90.

Ruts T, Matsubara S, Walter A (2013) Synchronous high-resolution phenotyping of leaf and root growth in Nicotiana tabacum over 24h periods with GROWMAP-plant. Plant Methods 9: 2.

Schlieper D, Foerster K, Paulus JK, Groth G (2013) Resolving the activation site of positive regulators in plant phosphoenolpyruvate carboxylase, Mol Plant 7 (2): 437 – 40.

Schulze S, Mallmann J, Burscheidt J, Koczor M, Streubel M, Bauwe H, Gowik U, Westhoff P (2013) Evolution of C4 photosynthesis in the genus Flaveria - establishment of a photorespiratory CO2 pump. Plant Cell 25, 2522-2535.

Stahl Y, Grabowski S, Bleckmann A, Kühnemuth R, Weidtkamp-Peters S, Gustavo Pinto K, Kirschner GK, Schmid JB, Wink RH, Hülsewede A, Felekyan S, Seidel CAM, Simon R (2013) Moderation of Arabidopsis Root Stemness by CLAVATA1 and ARABIDOPSIS CRINKLY4 Receptor Kinase Complexes. Current Biology 23 (5): 362-71.

Theodoulou FL, Bernhardt K, Linka N, Baker A (2013) Peroxisome membrane proteins: multiple trafficking routes and multiple functions? Biochem Journal 451 (3): 345-52.


Bernhardt K, Vigelius SK, Wiese J, Linka N, Weber APM (2012) Agrobacterium-mediated Arabidopsis thaliana transformation: An overview of T-DNA binary vectors, floral dip and screening for homozygous lines. Endocytobiosis Cell Res 22: 19-28.

Breuers FKH, Bräutigam A, Geimer S, Welzel UY, Stefano G, Renna L, Brandizzi F, Weber APM (2012) Dynamic remodeling of the plastid envelope membranes – a tool for chloroplast envelope in vivo localizations. Frontiers in Plant Sci 3: 7.

Colmsee C, Mascher M, Czauderna T, Hartmann A, Schlüter U, Zellerhoff N, Schmitz J, Bräutigam A, Pick TR, Alter P, Gahrtz M, Witt S, Fernie AR, Börnke F, Fahnenstich H, Bucher M, Dresselhaus T, Weber AP, Schreiber F, Scholz U, Sonnewald U (2012) OPTIMAS-DW: A comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize. BMC Plant Biol. 12(1):245.

Eisenhut M, Pick TR, Bordych C, Weber APM (2012) Towards closing the remaining gaps in photorespiration - the essential but unexplored role of transport proteins. Plant Biol 15 (4): 676-85.

Gruenheit N, Deusch O, Esser C, Becker M, Voelckel C, Lockhart P (2012) Cutoffs and k-mers: implications from a transcriptome study in allopolyploid plants. BMC Genomics 13: 92.

Göhre V, Jones AME, Sklenář J, Robatzek S, Weber APM (2012) Molecular crosstalk between PAMP-triggered immunity and photosynthesis. MPMI 25: 1083-92.

Göhre V, Vollmeister E, Bölker M, Feldbrügge M (2012) Microtubule-dependent membrane dynamics in Ustilago maydis: Trafficking and function of Rab5a-positive endosomes. Commun Integr Biol 5: 485-90.

Juszczak I, Rudnik R, Pietzeniuk B, Baier M (2012) Natural genetic variation in the expression regulation of the chloroplast antioxidant system among Arabidopsis thaliana accessions. Physiol Plant 146: 53-70.

Linka N, Esser C (2012) Transport proteins regulate the flux of metabolites and cofactors across the membrane of plant peroxisomes. Frontiers in Plant Sci 3: 3.

Nyathi Y, Zhang X, Baldwin JM, Bernhardt K, Johnson B, Baldwin SA, Theodoulou FL and Baker A (2012) Pseudo half-molecules of the ABC transporter, COMATOSE, bind Pex19 and target to peroxisomes independently but are both required for activity. FEBS Letters 586 (16): 2280-6.

Rosar C, Kanonenberg K, Nanda AM, Mielewczik M, Bräutigam A, Novák O, Strnad M, Walter A, Weber APM (2012) The leaf reticulate mutant dov1 is impaired in the first step of purine metabolism. Mol Plant 5: 1227-1241.

Ruts T, Matsubara S, Wiese-Klinkenberg A, Walter A (2012) Diel patterns of leaf and root growth: endogenous rhythmicity or environmental response? J Exp Botany 63 (9): 3339 – 51.

Ruts T, Matsubara S, Wiese-Klinkenberg A, Walter A (2012) Aberrant temporal growth pattern and morphology of root and shoot caused by a defective circadian clock in Arabidopsis thaliana. Plant Journal 72 (1): 154-61.

Wiludda C, Schulze S, Gowik U, Engelmann S, Koczor M, Streubel M, Bauwe H, Westhoff P (2012) Regulation of the Photorespiratory GLDPA Gene in C4 Flaveria: An Intricate Interplay of Transcriptional and Posttranscriptional Processes. Plant Cell 24: 137-151.

Bernhardt K, Wilkinson S, Weber AP, Linka N (2012) A peroxisomal carrier delivers NAD⁺ and contributes to optimal fatty acid degradation during storage oil mobilization. Plant J. 69(1):1-13. doi: 10.1111/j.1365-313X.2011.04775.x.

Juszczak I, Baier M (2012) The strength of the miR398-Csd2-CCS1 regulon is subject to natural variation in Arabidopsis thaliana. FEBS Lett. 2012 Sep 21;586(19):3385-90. doi: 10.1016/j.febslet.2012.07.049


Berckmans B, Vassileva V, Schmid SP, Maes S, Parizot B, Naramoto S, Magyar Z, Kamei CL, Koncz C, Bögre L, Persiau G, De Jaeger G, Friml J, Simon R, Beeckman T, De Veylder L (2011) Auxin-Dependent Cell Cycle Reactivation through Transcriptional Regulation of Arabidopsis E2Fa by Lateral Organ Boundary Proteins. Plant Cell 23: 3671-3683.

Bräutigam A, Kajala K, Wullenweber J, Sommer M, Gagneul D, Weber KL, Carr KM, Gowik U, Maß J, Lercher MJ, Westhoff P, Hibberd JM, Weber AP. (2011) An mRNA blueprint for C4 photosynthesis derived from comparative transcriptomics of closely related C3 and C4 species. Plant Physiology 155 (1): 142-156.

Breuers FKH, Bräutigam A, Weber APM (2011) The plastid outer envelope – a highly dynamic interface between plastid and cytoplasm. Frontiers in Plant Sci 2: 97.

Pick TR, Bräutigam A, Schlüter U, Denton AK, Colmsee C, Scholz U, Fahnenstich H, Pieruschka R, Rascher U, Sonnewald U, Weber APM (2011) Systems analysis of a maize leaf developmental gradient redefines the current C4 model and provides candidates for regulation. Plant Cell 23: 1-13.


Stahl Y, Wink R, Ingram G, Simon R (2009) A signalling module controlling the stem cell niche in Arabidopsis root meristems. Current Biology 19, 909-914.


* The authors contributed equally to this work.
















































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